Biological databases

Biological Databases

Some biological databases are available on the computers.

  • All blast databases (nt, nr, uniprot, etc) for proteins and nucleotides are in

    • /biodata/blastdb

  • The GenBank database is in

    • /biodata/bio_sequences/nucleotides/genbank/current

  • The UniProt database is in

    • /biodata/bio_sequences/proteins/uniprot/current

The databases are configurable for several packages: emboss, PFAM, prosite, etc.
Ask to the bioinformatic platform staff.

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